negbio
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Contents:
Getting Started with NegBio
NegBio User Guide
NegBio Developer Guide
License
Contributing
Acknowledgments
Disclaimer
Reference
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NegBio documentation
¶
Contents:
Getting Started with NegBio
Installing
Prerequisites
Installing from source (recommended)
Installing from pip
Using NegBio
Prepare the dataset
Run the script
Using CheXpert algorithm
Using MetaMap
Next Steps
NegBio User Guide
Run the pipeline step-by-step
1. Convert text files to BioC format
2. Normalize reports
3. Split each report into sections
4. Splits each report into sentences
5. Named entity recognition
6. Parse the sentence
7. Convert the parse tree to UD
8. Detect negative and uncertain findings
9. Cleans intermediate information
NegBio Developer Guide
Create the documentation
License
Contributing
Acknowledgments
Disclaimer
Reference
Indices and tables
¶
Index
Module Index
Search Page
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